Strategies For Protein Purification Process

In purified proteins, investigators utilize them for various experimental applications like in vitro biochemical assays and structural studies. In culture, you can acquire proteins from tissues or through their overexpression amid the model organism, like yeast, bacteria, or mammalian cells. Protein purification comprises isolating proteins from sources based on specific differences concerning physical properties. The entire goal of protein purification is to retain an enormous amount of protein with the fewest contaminants. 

There are four primary forms of column chromatography commonly utilized in the purification process. Besides, affinity column chromatography is essential based on HIS, FLAG, and GST tags and size. It is necessary to understand the development of the protein purification scheme before moving further. The purity and quantity of specific proteins should be adequate for experimental analysis. Moreover, insight into the protein’s behavior should be considered since researchers require functional and well-folded protein for downstream applications.

In addition, during subsequent and purification storage, several processes can affect protein quality: protein aggregation, unfolding, loss of function, and degradation. 

Introduction to Protein Purification

Starting with the fundamental step under Protein Production Services, one needs to know the protein of interest. However, there are four essential steps: cell lysis, protein binding to a matrix, washing, and elution. Investigators can accomplish cell lysis in various ways, including non-enzymatic processes or hydrolytic enzyme use like lysozyme or a detergent reagent. Since native protein purification is challenging, researchers often use affinity tags to fuse recombinant proteins of interest. 

Protein Purification Strategies

Proteins are also reckoned as biological macromolecules, maintaining specific cells’ functional and structural integrity and several diseases. Moreover, the protein purification process is crucial to analyze protein complexes and individual proteins and identify interactions between other proteins: RNA or DNA. 

Protein Purification

One of the fundamental purification protocols depends on the protein of interest and several factors like cells utilized to express recombinant proteins. Moving on, Escherichia coli tends to remain the first option of many investigators to produce recombinant proteins because of rapid cell growth, ease of use, and low culturing cost. When it concerns proteins expressed through E. coli, you can purify them in significant quantities. However, these proteins might not exhibit adequate protein folding or activity. 

Isolation of Protein Complexes

Another considerable objective under proteomics is the protein elucidation function and complex network organization responsible for critical cellular processes.

Protein Analysis: Protein interactions might offer helpful insight into cell signaling cascades. Moreover, nucleic acid interactions often reveal essential biological processes like chromosomal remodeling, mRNA regulation, and transcription. For instance, transcription factors can play a crucial role in transcript regulation by interacting with specific recognition sites.

Selecting Optimal Resins for Recombinant Proteins

One of the downstream processes includes purification, representing around 45-92% of the entire manufacturing cost of a pure batch. As a result, devising economic and efficient purification processes is an absolute necessity. 

Aggregate Removal

mAbs purification faces several challenges, comprising process complexities related to aggregate removal and formation. The availability of aggregates also hinders the potent mAbs efficacy because of additional storage stability, bioactivity, pharmacokinetics, and immunogenicity properties. Herby, aggregate removal has become a considerable focus of the entire process’ downstream processing.

Some of the driving factors involved in the purification of proteins are mentioned in a rundown:


Buffering component

A buffer is one of the solutions comprising a conjugate base pair. Its pH range is based on the pKa, where 50% of all the molecules occur in acidic forms, whereas the rest of 50% is in the basic form. In addition, a general rule concerning buffers: the solution’s pH must be within 1.0 pH unit of the pKa. This is to offer adequate buffering capacity. Moreover, it makes sure there is an appropriate molecule in both its elemental and acidic forms to eliminate the solution in the case of OH- or H+ influx. Thus, a buffer can prevent pH transformations that adversely impact protein stability.

Solution additives

Apart from an adequate buffering system, solutions utilized in the protein purification through lysis to storage also consist of several other elements that play a considerable role in facilitating protein stability, purity, and function.

Impact of expression system on protein purification

Researchers must prepare an initial crude sample before proceeding to purify specific proteins. Moreover, the first consideration is the protein of interest source, which occurs in advance of performing actual purifications. This can also be one of the native sources like muscle, liver, or brain tissues; wherein investigators can purify proteins through native sources. However, researchers are still investigating the catalytic activities to determine a protein sequence required in the purification process.


Native protein purification is challenging and requires finesse and specific types of approaches. However, investigators either utilize affinity tags or other removing techniques to establish a sequence between the protein of interest and the expression system.